User profiles for Oliver Rübel
Oliver RübelLawrence Berkeley National Laboratory Verified email at lbl.gov Cited by 3121 |
VisIt: An end-user tool for visualizing and analyzing very large data
VisIt is a popular open source tool for visualizing and analyzing data. It owes its success to
its foci of increasing data understanding, large data support, and providing a robust and …
its foci of increasing data understanding, large data support, and providing a robust and …
[HTML][HTML] A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm
To fully understand animal transcription networks, it is essential to accurately measure the
spatial and temporal expression patterns of transcription factors and their targets. We describe …
spatial and temporal expression patterns of transcription factors and their targets. We describe …
The Neurodata Without Borders ecosystem for neurophysiological data science
The neurophysiology of cells and tissues are monitored electrophysiologically and optically
in diverse experiments and species, ranging from flies to humans. Understanding the brain …
in diverse experiments and species, ranging from flies to humans. Understanding the brain …
Dirigent protein-mediated lignan and cyanogenic glucoside formation in flax seed: integrated omics and MALDI mass spectrometry imaging
DS Dalisay, KW Kim, C Lee, H Yang… - Journal of natural …, 2015 - ACS Publications
An integrated omics approach using genomics, transcriptomics, metabolomics (MALDI
mass spectrometry imaging, MSI), and bioinformatics was employed to study spatiotemporal …
mass spectrometry imaging, MSI), and bioinformatics was employed to study spatiotemporal …
OpenMSI: a high-performance web-based platform for mass spectrometry imaging
Mass spectrometry imaging (MSI) enables researchers to directly probe endogenous
molecules directly within the architecture of the biological matrix. Unfortunately, efficient access, …
molecules directly within the architecture of the biological matrix. Unfortunately, efficient access, …
Parallel index and query for large scale data analysis
Modern scientific datasets present numerous data management and analysis challenges.
State-of-the-art index and query technologies are critical for facilitating interactive exploration …
State-of-the-art index and query technologies are critical for facilitating interactive exploration …
Resolution dependence of precipitation statistical fidelity in hindcast simulations
Numerous studies have shown that atmospheric models with high horizontal resolution
better represent the physics and statistics of precipitation in climate models. While it is …
better represent the physics and statistics of precipitation in climate models. While it is …
NWB: N 2.0: an accessible data standard for neurophysiology
Neurodata Without Borders: Neurophysiology (NWB:N) is a data standard for neurophysiology,
providing neuroscientists with a common standard to share, archive, use, and build …
providing neuroscientists with a common standard to share, archive, use, and build …
High-throughput characterization of porous materials using graphics processing units
We have developed a high-throughput graphics processing unit (GPU) code that can
characterize a large database of crystalline porous materials. In our algorithm, the GPU is utilized …
characterize a large database of crystalline porous materials. In our algorithm, the GPU is utilized …
[HTML][HTML] FAIR for AI: An interdisciplinary and international community building perspective
A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were
proposed in 2016 as prerequisites for proper data management and stewardship, with the …
proposed in 2016 as prerequisites for proper data management and stewardship, with the …