User profiles for Oliver Rübel

Oliver Rübel

Lawrence Berkeley National Laboratory
Verified email at lbl.gov
Cited by 3121

VisIt: An end-user tool for visualizing and analyzing very large data

…, A Sanderson, C Garth, EW Bethel, D Camp, O Rübel… - 2012 - api.taylorfrancis.com
VisIt is a popular open source tool for visualizing and analyzing data. It owes its success to
its foci of increasing data understanding, large data support, and providing a robust and …

[HTML][HTML] A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

…, CLL Hendriks, SVE Keränen, GH Weber, O Rübel… - Cell, 2008 - cell.com
To fully understand animal transcription networks, it is essential to accurately measure the
spatial and temporal expression patterns of transcription factors and their targets. We describe …

The Neurodata Without Borders ecosystem for neurophysiological data science

O Rübel, A Tritt, R Ly, BK Dichter, S Ghosh, L Niu… - Elife, 2022 - elifesciences.org
The neurophysiology of cells and tissues are monitored electrophysiologically and optically
in diverse experiments and species, ranging from flies to humans. Understanding the brain …

Dirigent protein-mediated lignan and cyanogenic glucoside formation in flax seed: integrated omics and MALDI mass spectrometry imaging

DS Dalisay, KW Kim, C Lee, H Yang… - Journal of natural …, 2015 - ACS Publications
An integrated omics approach using genomics, transcriptomics, metabolomics (MALDI
mass spectrometry imaging, MSI), and bioinformatics was employed to study spatiotemporal …

OpenMSI: a high-performance web-based platform for mass spectrometry imaging

O Rübel, A Greiner, S Cholia, K Louie… - Analytical …, 2013 - ACS Publications
Mass spectrometry imaging (MSI) enables researchers to directly probe endogenous
molecules directly within the architecture of the biological matrix. Unfortunately, efficient access, …

Parallel index and query for large scale data analysis

…, J Qiang, EW Bethel, A Shoshani, O Rübel… - Proceedings of 2011 …, 2011 - dl.acm.org
Modern scientific datasets present numerous data management and analysis challenges.
State-of-the-art index and query technologies are critical for facilitating interactive exploration …

Resolution dependence of precipitation statistical fidelity in hindcast simulations

…, WD Collins, K Kashinath, O Rübel… - Journal of Advances …, 2016 - Wiley Online Library
Numerous studies have shown that atmospheric models with high horizontal resolution
better represent the physics and statistics of precipitation in climate models. While it is …

NWB: N 2.0: an accessible data standard for neurophysiology

O Rübel, A Tritt, B Dichter, T Braun, N Cain, N Clack… - BioRxiv, 2019 - biorxiv.org
Neurodata Without Borders: Neurophysiology (NWB:N) is a data standard for neurophysiology,
providing neuroscientists with a common standard to share, archive, use, and build …

High-throughput characterization of porous materials using graphics processing units

J Kim, RL Martin, O Rübel… - Journal of chemical …, 2012 - ACS Publications
We have developed a high-throughput graphics processing unit (GPU) code that can
characterize a large database of crystalline porous materials. In our algorithm, the GPU is utilized …

[HTML][HTML] FAIR for AI: An interdisciplinary and international community building perspective

…, MS Neubauer, FE Psomopoulos, A Roy, O Rübel… - Scientific data, 2023 - nature.com
A foundational set of findable, accessible, interoperable, and reusable (FAIR) principles were
proposed in 2016 as prerequisites for proper data management and stewardship, with the …